IL_6HCM_307

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6HCM|1|82|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_307 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.2891

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6HCM|1|52|C|6
6HCM|1|52|C|7
*
6HCM|1|82|G|149
6HCM|1|82|C|150
6HCM|1|82|G|151

Current chains

Chain 52

28S ribosomal RNA

Chain 82

5.8S ribosomal RNA

Nearby chains

Chain G3

eL8

Chain N3

Ribosomal protein L15

Chain X3

uL23