3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CC*GCG
Length
5 nucleotides
Bulged bases
6HCM|1|82|C|150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_307 not in the Motif Atlas
Geometric match to IL_1DQF_001
Geometric discrepancy: 0.2891
The information below is about IL_1DQF_001
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

6HCM|1|52|C|6
6HCM|1|52|C|7
*
6HCM|1|82|G|149
6HCM|1|82|C|150
6HCM|1|82|G|151

Current chains

Chain 52
28S ribosomal RNA
Chain 82
5.8S ribosomal RNA

Nearby chains

Chain G3
eL8
Chain N3
Ribosomal protein L15
Chain X3
uL23

Coloring options:


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