IL_6HCM_308
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_308 not in the Motif Atlas
- Homologous match to IL_8CRE_005
- Geometric discrepancy: 0.208
- The information below is about IL_8CRE_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6HCM|1|52|C|30
6HCM|1|52|U|31
6HCM|1|52|G|32
6HCM|1|52|A|33
6HCM|1|52|A|34
6HCM|1|52|U|35
6HCM|1|52|U|36
6HCM|1|52|U|37
*
6HCM|1|52|A|44
6HCM|1|52|U|45
6HCM|1|52|U|46
6HCM|1|52|A|47
6HCM|1|52|G|48
6HCM|1|52|U|49
6HCM|1|52|C|50
6HCM|1|52|A|51
6HCM|1|52|G|52
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain a3
- uL15
- Chain j3
- Ribosomal protein L37
- Chain o3
- eL42
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