IL_6HCM_334

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6HCM|1|52|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_334 not in the Motif Atlas

Geometric match to IL_7MKY_001

Geometric discrepancy: 0.3353

The information below is about IL_7MKY_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6HCM|1|52|G|4291
6HCM|1|52|A|4292
6HCM|1|52|U|4293
*
6HCM|1|52|A|4317
6HCM|1|52|C|4318

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain b3

eL29

Chain o3

eL42