IL_6HCM_352
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6HCM|1|A1|A|628, 6HCM|1|A1|U|630, 6HCM|1|A1|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_352 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.1946
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HCM|1|A1|G|611
6HCM|1|A1|U|612
6HCM|1|A1|G|613
6HCM|1|A1|C|614
6HCM|1|A1|C|615
6HCM|1|A1|A|616
6HCM|1|A1|G|617
*
6HCM|1|A1|C|624
6HCM|1|A1|G|625
6HCM|1|A1|G|626
6HCM|1|A1|U|627
6HCM|1|A1|A|628
6HCM|1|A1|A|629
6HCM|1|A1|U|630
6HCM|1|A1|U|631
6HCM|1|A1|C|632
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain E1
- uS3
- Chain Y1
- uS12
- Chain f1
- 40S ribosomal protein S30
- Chain j1
- eRF1(AAQ)
- Chain w3
- mRNA
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