IL_6HCM_353
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_353 not in the Motif Atlas
- Homologous match to IL_8CRE_437
- Geometric discrepancy: 0.2183
- The information below is about IL_8CRE_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_97273.1
- Basepair signature
- cWW-tSH-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6HCM|1|A1|A|1042
6HCM|1|A1|G|1043
6HCM|1|A1|G|1044
6HCM|1|A1|U|1045
6HCM|1|A1|U|1046
6HCM|1|A1|C|1047
*
6HCM|1|A1|G|1071
6HCM|1|A1|U|1072
6HCM|1|A1|U|1073
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain A3
- Ribosomal protein L8
- Chain P1
- uS11
- Chain b1
- eS26
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