IL_6HCM_356

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

6HCM|1|A1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_356 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3738

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HCM|1|A1|C|1395
6HCM|1|A1|A|1396
6HCM|1|A1|U|1397
6HCM|1|A1|G|1398
6HCM|1|A1|C|1399
*
6HCM|1|A1|G|1447
6HCM|1|A1|A|1448
6HCM|1|A1|G|1449
6HCM|1|A1|G|1450

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain R1

Ribosomal protein S16

Chain S1

eS17

Chain V1

uS10

Chain h1

RACK1