IL_6HCQ_014

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

6HCQ|1|51|C|340

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_014 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.3429

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6HCQ|1|51|C|339
6HCQ|1|51|C|340
6HCQ|1|51|G|341
6HCQ|1|51|G|342
*
6HCQ|1|81|C|32
6HCQ|1|81|G|33

Current chains

Chain 51

28S ribosomal RNA

Chain 81

5.8S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

eL13

Chain j3

Ribosomal protein L37