IL_6HCQ_042

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_042 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3608

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6HCQ|1|51|C|1469
6HCQ|1|51|G|1470
6HCQ|1|51|U|1471
6HCQ|1|51|C|1472
*
6HCQ|1|51|G|1493
6HCQ|1|51|U|1494
6HCQ|1|51|G|1495

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain Q3

eL18

Chain a3

uL15

Chain b3

eL29