IL_6HCQ_061
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- GGCGCCCGAU*GGCC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCQ_061 not in the Motif Atlas
- Geometric match to IL_7R9G_002
- Geometric discrepancy: 0.2756
- The information below is about IL_7R9G_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6HCQ|1|51|G|1909
6HCQ|1|51|G|1910
6HCQ|1|51|C|1911
6HCQ|1|51|G|1912
6HCQ|1|51|C|1913
6HCQ|1|51|C|1914
6HCQ|1|51|C|1915
6HCQ|1|51|G|1916
6HCQ|1|51|A|1917
6HCQ|1|51|U|1918
*
6HCQ|1|51|G|2064
6HCQ|1|51|G|2065
6HCQ|1|51|C|2066
6HCQ|1|51|C|2067
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 71
- 5S ribosomal RNA; 5S rRNA
- Chain F3
- uL30
- Chain O3
- uL13
- Chain S3
- eL20
- Chain f3
- eL33
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