IL_6HCQ_076

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCC*GGUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_076 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3217

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6HCQ|1|51|C|2614
6HCQ|1|51|C|2615
6HCQ|1|51|C|2616
*
6HCQ|1|51|G|2721
6HCQ|1|51|G|2722
6HCQ|1|51|U|2723
6HCQ|1|51|G|2724

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain g3

eL34