IL_6HCQ_077

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCAG*CGUGC

Length

9 nucleotides

Bulged bases

6HCQ|1|51|U|2687

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_077 not in the Motif Atlas

Geometric match to IL_7RQB_011

Geometric discrepancy: 0.3909

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6HCQ|1|51|G|2645
6HCQ|1|51|C|2646
6HCQ|1|51|A|2647
6HCQ|1|51|G|2648
*
6HCQ|1|51|C|2685
6HCQ|1|51|G|2686
6HCQ|1|51|U|2687
6HCQ|1|51|G|2688
6HCQ|1|51|C|2689

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain g3

eL34