IL_6HCQ_124

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GUCCC*GUCAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_124 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3601

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HCQ|1|51|G|4884
6HCQ|1|51|U|4885
6HCQ|1|51|C|4886
6HCQ|1|51|C|4887
6HCQ|1|51|C|4888
*
6HCQ|1|51|G|4931
6HCQ|1|51|U|4932
6HCQ|1|51|C|4933
6HCQ|1|51|A|4934
6HCQ|1|51|C|4935

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain M3

Ribosomal protein L14

Chain f3

eL33