IL_6HCQ_127

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGGUC*GACAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_127 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2951

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HCQ|1|51|G|4992
6HCQ|1|51|G|4993
6HCQ|1|51|G|4994
6HCQ|1|51|U|4995
6HCQ|1|51|C|4996
*
6HCQ|1|51|G|5055
6HCQ|1|51|A|5056
6HCQ|1|51|C|5057
6HCQ|1|51|A|5058
6HCQ|1|51|C|5059

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain d3

eL31