IL_6HCQ_140

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CAUG*CAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_140 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3573

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6HCQ|1|A2|C|49
6HCQ|1|A2|A|50
6HCQ|1|A2|U|51
6HCQ|1|A2|G|52
*
6HCQ|1|A2|C|475
6HCQ|1|A2|A|476
6HCQ|1|A2|G|477

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain Z2

eS24