IL_6HCQ_151

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6HCQ|1|A2|A|426

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_151 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.3238

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6HCQ|1|A2|G|411
6HCQ|1|A2|G|412
6HCQ|1|A2|G|413
*
6HCQ|1|A2|C|424
6HCQ|1|A2|G|425
6HCQ|1|A2|A|426
6HCQ|1|A2|U|427
6HCQ|1|A2|U|428
6HCQ|1|A2|C|429

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain F2

eS4

Chain K2

Ribosomal protein S9 (Predicted)

Chain Y2

uS12