IL_6HCQ_186
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- GCCGU*ACAGGU
- Length
- 11 nucleotides
- Bulged bases
- 6HCQ|1|A2|A|1489
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCQ_186 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3255
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6HCQ|1|A2|G|1335
6HCQ|1|A2|C|1336
6HCQ|1|A2|C|1337
6HCQ|1|A2|G|1338
6HCQ|1|A2|U|1339
*
6HCQ|1|A2|A|1487
6HCQ|1|A2|C|1488
6HCQ|1|A2|A|1489
6HCQ|1|A2|G|1490
6HCQ|1|A2|G|1491
6HCQ|1|A2|U|1492
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain D2
- eS1
- Chain E2
- uS3
- Chain R2
- Ribosomal protein S16
- Chain V2
- uS10
- Chain e2
- uS14
- Chain q3
- Transfer RNA; tRNA
- Chain v3
- mRNA
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