IL_6HCQ_248

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_248 not in the Motif Atlas

Geometric match to IL_8C3A_012

Geometric discrepancy: 0.2395

The information below is about IL_8C3A_012

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6HCQ|1|51|U|3721
6HCQ|1|51|G|3722
*
6HCQ|1|51|C|3731
6HCQ|1|51|A|3732
6HCQ|1|51|A|3733

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain i3

60S ribosomal protein L36

Chain o3

eL42