IL_6HCQ_310

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCQ_310 not in the Motif Atlas

Geometric match to IL_5E81_401

Geometric discrepancy: 0.3379

The information below is about IL_5E81_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6HCQ|1|51|G|1404
6HCQ|1|51|C|1405
6HCQ|1|51|G|1406
*
6HCQ|1|51|C|1411|||C
6HCQ|1|51|G|1412
6HCQ|1|51|C|1413

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain a3

uL15