IL_6HCQ_346
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- CCGCUAG*CUUGGACCGG
- Length
- 17 nucleotides
- Bulged bases
- 6HCQ|1|A2|G|970
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCQ_346 not in the Motif Atlas
- Homologous match to IL_8P9A_422
- Geometric discrepancy: 0.232
- The information below is about IL_8P9A_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57741.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6HCQ|1|A2|C|950
6HCQ|1|A2|C|951
6HCQ|1|A2|G|952
6HCQ|1|A2|C|953
6HCQ|1|A2|U|954
6HCQ|1|A2|A|955
6HCQ|1|A2|G|956
*
6HCQ|1|A2|C|967
6HCQ|1|A2|U|968
6HCQ|1|A2|U|969
6HCQ|1|A2|G|970
6HCQ|1|A2|G|971
6HCQ|1|A2|A|972
6HCQ|1|A2|C|973
6HCQ|1|A2|C|974
6HCQ|1|A2|G|975
6HCQ|1|A2|G|976
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain A3
- Ribosomal protein L8
- Chain C2
- 40S ribosomal protein S3a
- Chain P2
- uS11
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