IL_6HD7_001

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCU*AGCG

Length

7 nucleotides

Bulged bases

6HD7|1|4|C|151

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_001 not in the Motif Atlas

Homologous match to IL_8C3A_001

Geometric discrepancy: 0.5375

The information below is about IL_8C3A_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HD7|1|1|C|7
6HD7|1|1|C|8
6HD7|1|1|U|9
*
6HD7|1|4|A|149
6HD7|1|4|G|150
6HD7|1|4|C|151
6HD7|1|4|G|152

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Chain 4

5.8S rRNA

Nearby chains

Chain K

60S ribosomal protein L8-A

Chain P

60S ribosomal protein L15-A

Chain Z

60S ribosomal protein L25