IL_6HD7_002
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AAUC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 6HD7|1|1|U|14
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HD7_002 not in the Motif Atlas
- Geometric match to IL_3TD0_002
- Geometric discrepancy: 0.2308
- The information below is about IL_3TD0_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6HD7|1|1|A|12
6HD7|1|1|A|13
6HD7|1|1|U|14
6HD7|1|1|C|15
*
6HD7|1|4|G|144
6HD7|1|4|U|145
6HD7|1|4|U|146
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L8-A
- Chain P
- 60S ribosomal protein L15-A
- Chain Z
- 60S ribosomal protein L25
Coloring options: