IL_6HD7_077

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6HD7|1|1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_077 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1674

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6HD7|1|1|C|1918
6HD7|1|1|G|1919
6HD7|1|1|U|1920
6HD7|1|1|A|1921
6HD7|1|1|A|1922
6HD7|1|1|C|1923
*
6HD7|1|1|G|1928
6HD7|1|1|G|1929
6HD7|1|1|A|1930
6HD7|1|1|U|1931
6HD7|1|1|A|1932
6HD7|1|1|A|1933
6HD7|1|1|G|1934

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain p

60S ribosomal protein L41-A