IL_6HD7_086

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6HD7|1|1|U|2159, 6HD7|1|1|U|2175, 6HD7|1|1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_086 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.195

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6HD7|1|1|C|2156
6HD7|1|1|G|2157
6HD7|1|1|A|2158
6HD7|1|1|U|2159
6HD7|1|1|G|2160
6HD7|1|1|G|2161
*
6HD7|1|1|U|2173
6HD7|1|1|G|2174
6HD7|1|1|U|2175
6HD7|1|1|U|2176
6HD7|1|1|G|2177
6HD7|1|1|A|2178
6HD7|1|1|C|2179
6HD7|1|1|G|2180

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain E

60S ribosomal protein L2-A