IL_6HD7_092

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6HD7|1|1|A|2281, 6HD7|1|1|C|2287, 6HD7|1|1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_092 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.2823

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6HD7|1|1|C|2277
6HD7|1|1|C|2278
6HD7|1|1|A|2279
6HD7|1|1|A|2280
6HD7|1|1|A|2281
6HD7|1|1|U|2282
6HD7|1|1|G|2283
6HD7|1|1|C|2284
6HD7|1|1|C|2285
6HD7|1|1|U|2286
6HD7|1|1|C|2287
6HD7|1|1|G|2288
*
6HD7|1|1|C|2304
6HD7|1|1|G|2305
6HD7|1|1|C|2306
6HD7|1|1|G|2307

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain B

Transfer RNA; tRNA

Chain p

60S ribosomal protein L41-A