IL_6HD7_101
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HD7_101 not in the Motif Atlas
- Geometric match to IL_7RQB_082
- Geometric discrepancy: 0.2406
- The information below is about IL_7RQB_082
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6HD7|1|1|C|2666
6HD7|1|1|A|2667
6HD7|1|1|U|2668
*
6HD7|1|1|A|2686
6HD7|1|1|G|2687
6HD7|1|1|U|2688
6HD7|1|1|A|2689
6HD7|1|1|G|2690
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 60S ribosomal protein L5
- Chain M
- 60S ribosomal protein L11-A
- Chain V
- 60S ribosomal protein L21-A
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