IL_6HD7_127

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

6HD7|1|1|C|3228, 6HD7|1|1|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_127 not in the Motif Atlas

Homologous match to IL_5TBW_126

Geometric discrepancy: 0.4475

The information below is about IL_5TBW_126

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6HD7|1|1|C|3225
6HD7|1|1|A|3226
6HD7|1|1|A|3227
6HD7|1|1|C|3228
6HD7|1|1|G|3229
*
6HD7|1|1|U|3258
6HD7|1|1|U|3259
6HD7|1|1|G|3260

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain I

60S ribosomal protein L6-A

Chain O

60S ribosomal protein L14-A