IL_6HD7_135

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

6HD7|1|1|A|3344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_135 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2458

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6HD7|1|1|A|3342
6HD7|1|1|G|3343
6HD7|1|1|A|3344
6HD7|1|1|G|3345
*
6HD7|1|1|C|3360
6HD7|1|1|G|3361
6HD7|1|1|A|3362
6HD7|1|1|U|3363

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain W

60S ribosomal protein L22-A