IL_6HD7_136

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

6HD7|1|1|U|3354, 6HD7|1|1|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_136 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.2771

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HD7|1|1|C|3349
6HD7|1|1|C|3350
*
6HD7|1|1|G|3353
6HD7|1|1|U|3354
6HD7|1|1|U|3355
6HD7|1|1|G|3356

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain W

60S ribosomal protein L22-A