IL_6HD7_148

3D structure

PDB id

6HD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-NatA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCC*GUGCG

Length

8 nucleotides

Bulged bases

6HD7|1|1|C|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HD7_148 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3574

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6HD7|1|1|C|1669
6HD7|1|1|C|1670
6HD7|1|1|C|1671
*
6HD7|1|1|G|1776
6HD7|1|1|U|1777
6HD7|1|1|G|1778
6HD7|1|1|C|1779
6HD7|1|1|G|1780

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain i

60S ribosomal protein L34-A