3D structure

PDB id
6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the ribosome-NatA complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UUGA*UACA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HD7_155 not in the Motif Atlas
Homologous match to IL_8CRE_109
Geometric discrepancy: 0.3042
The information below is about IL_8CRE_109
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6HD7|1|1|U|2718
6HD7|1|1|U|2719
6HD7|1|1|G|2720
6HD7|1|1|A|2721
*
6HD7|1|1|U|2735
6HD7|1|1|A|2736
6HD7|1|1|C|2737
6HD7|1|1|A|2738

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain C
60S ribosomal protein L42-A
Chain H
60S ribosomal protein L5
Chain S
60S ribosomal protein L18-A
Chain V
60S ribosomal protein L21-A
Chain d
60S ribosomal protein L29

Coloring options:


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