IL_6HHQ_175
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 6HHQ|1|A|A|619, 6HHQ|1|A|A|620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_175 not in the Motif Atlas
- Geometric match to IL_4V88_416
- Geometric discrepancy: 0.0708
- The information below is about IL_4V88_416
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.3
- Basepair signature
- cWW-L-cWW-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
6HHQ|1|A|G|616
6HHQ|1|A|U|617
6HHQ|1|A|U|618
6HHQ|1|A|A|619
6HHQ|1|A|A|620
6HHQ|1|A|A|621
6HHQ|1|A|A|622
*
6HHQ|1|A|U|1104
6HHQ|1|A|C|1105
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Y
- 40S ribosomal protein S23-A
- Chain b
- 40S ribosomal protein S26-B
Coloring options: