IL_6HHQ_187

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6HHQ|1|A|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_187 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1084

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6HHQ|1|A|C|874
6HHQ|1|A|G|875
6HHQ|1|A|G|876
6HHQ|1|A|G|877
6HHQ|1|A|G|878
*
6HHQ|1|A|C|950
6HHQ|1|A|A|951
6HHQ|1|A|A|952
6HHQ|1|A|G|953

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S1-A

Chain O

40S ribosomal protein S13

Chain b

40S ribosomal protein S26-B