3D structure

PDB id
6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound C45 bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAAUGUAG*UAUUAUAGC
Length
17 nucleotides
Bulged bases
6HHQ|1|AR|U|534, 6HHQ|1|AR|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HHQ_250 not in the Motif Atlas
Homologous match to IL_5TBW_020
Geometric discrepancy: 0.0784
The information below is about IL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07703.1
Basepair signature
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6HHQ|1|AR|G|531
6HHQ|1|AR|A|532
6HHQ|1|AR|A|533
6HHQ|1|AR|U|534
6HHQ|1|AR|G|535
6HHQ|1|AR|U|536
6HHQ|1|AR|A|537
6HHQ|1|AR|G|538
*
6HHQ|1|AR|U|553
6HHQ|1|AR|A|554
6HHQ|1|AR|U|555
6HHQ|1|AR|U|556
6HHQ|1|AR|A|557
6HHQ|1|AR|U|558
6HHQ|1|AR|A|559
6HHQ|1|AR|G|560
6HHQ|1|AR|C|561

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain CO
60S ribosomal protein L14-A
Chain CU
60S ribosomal protein L20-A
Chain p0
60S acidic ribosomal protein P0

Coloring options:


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