IL_6HHQ_290

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HHQ_290 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0534

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6HHQ|1|AR|G|1444
6HHQ|1|AR|U|1445
6HHQ|1|AR|A|1446
6HHQ|1|AR|G|1447
6HHQ|1|AR|U|1448
6HHQ|1|AR|A|1449
6HHQ|1|AR|G|1450
*
6HHQ|1|AR|C|2354
6HHQ|1|AR|G|2355
6HHQ|1|AR|A|2356
6HHQ|1|AR|A|2357
6HHQ|1|AR|A|2358
6HHQ|1|AR|C|2359

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AT

5.8S ribosomal RNA; 5.8S rRNA

Chain CF

60S ribosomal protein L4-A

Chain CR

60S ribosomal protein L17-A