3D structure

PDB id
6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound C45 bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUGCCAG*CGGUAAUUC
Length
16 nucleotides
Bulged bases
6HHQ|1|sR|A|579, 6HHQ|1|sR|U|581, 6HHQ|1|sR|U|582
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HHQ_406 not in the Motif Atlas
Homologous match to IL_4V88_415
Geometric discrepancy: 0.102
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6HHQ|1|sR|G|562
6HHQ|1|sR|U|563
6HHQ|1|sR|G|564
6HHQ|1|sR|C|565
6HHQ|1|sR|C|566
6HHQ|1|sR|A|567
6HHQ|1|sR|G|568
*
6HHQ|1|sR|C|575
6HHQ|1|sR|G|576
6HHQ|1|sR|G|577
6HHQ|1|sR|U|578
6HHQ|1|sR|A|579
6HHQ|1|sR|A|580
6HHQ|1|sR|U|581
6HHQ|1|sR|U|582
6HHQ|1|sR|C|583

Current chains

Chain sR
18S ribosomal RNA

Nearby chains

Chain d3
40S ribosomal protein S23-A
Chain e0
40S ribosomal protein S30-A
Chain s3
40S ribosomal protein S3

Coloring options:


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