IL_6HHQ_426
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_426 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.0602
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6HHQ|1|sR|C|990
6HHQ|1|sR|G|991
6HHQ|1|sR|A|992
6HHQ|1|sR|A|993
6HHQ|1|sR|G|994
*
6HHQ|1|sR|C|1010
6HHQ|1|sR|G|1011
6HHQ|1|sR|U|1012
6HHQ|1|sR|A|1013
6HHQ|1|sR|G|1014
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CD
- 60S ribosomal protein L2-A
- Chain c4
- 40S ribosomal protein S14-B
- Chain d6
- 40S ribosomal protein S26-B
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