IL_6HHQ_455
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_455 not in the Motif Atlas
- Homologous match to IL_4V88_466
- Geometric discrepancy: 0.0711
- The information below is about IL_4V88_466
- Detailed Annotation
- Non canonical cWW and near pair
- Broad Annotation
- Non canonical cWW and near pair
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HHQ|1|sR|C|1644
6HHQ|1|sR|G|1645
6HHQ|1|sR|C|1646
6HHQ|1|sR|U|1647
*
6HHQ|1|sR|A|1753
6HHQ|1|sR|A|1754
6HHQ|1|sR|A|1755
6HHQ|1|sR|A|1756
6HHQ|1|sR|G|1757
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain DP
- 60S ribosomal protein L41-B
- Chain d3
- 40S ribosomal protein S23-A
- Chain e0
- 40S ribosomal protein S30-A
Coloring options: