IL_6HHQ_481
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUG*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HHQ_481 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.1988
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6HHQ|1|A|C|1173
6HHQ|1|A|C|1174
6HHQ|1|A|U|1175
6HHQ|1|A|G|1176
*
6HHQ|1|A|C|1463
6HHQ|1|A|G|1464
6HHQ|1|A|C|1465
6HHQ|1|A|G|1466
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain R
- 40S ribosomal protein S16-A
- Chain T
- 40S ribosomal protein S18-A
- Chain U
- 40S ribosomal protein S19-A
- Chain V
- 40S ribosomal protein S20
- Chain i
- Suppressor protein STM1
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