IL_6HMA_007

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_007 not in the Motif Atlas

Homologous match to IL_4WF9_008

Geometric discrepancy: 0.0922

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6HMA|1|A|G|190
6HMA|1|A|A|191
6HMA|1|A|G|192
6HMA|1|A|A|193
6HMA|1|A|A|194
6HMA|1|A|C|195
6HMA|1|A|U|196
6HMA|1|A|G|197
*
6HMA|1|A|C|204
6HMA|1|A|U|205
6HMA|1|A|U|206
6HMA|1|A|A|207
6HMA|1|A|G|208
6HMA|1|A|U|209
6HMA|1|A|A|210
6HMA|1|A|C|211
6HMA|1|A|C|212

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28