IL_6HMA_019

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6HMA|1|A|G|846, 6HMA|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_019 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.098

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

6HMA|1|A|G|719
6HMA|1|A|A|720
6HMA|1|A|A|721
6HMA|1|A|A|722
6HMA|1|A|C|723
*
6HMA|1|A|G|844
6HMA|1|A|A|845
6HMA|1|A|G|846
6HMA|1|A|A|847
6HMA|1|A|U|848
6HMA|1|A|A|849
6HMA|1|A|G|850
6HMA|1|A|C|851

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15