IL_6HMA_028
3D structure
- PDB id
- 6HMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HMA_028 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.0726
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HMA|1|A|G|901
6HMA|1|A|A|902
6HMA|1|A|G|903
6HMA|1|A|G|904
6HMA|1|A|U|905
6HMA|1|A|A|906
6HMA|1|A|G|907
*
6HMA|1|A|C|960
6HMA|1|A|G|961
6HMA|1|A|A|962
6HMA|1|A|A|963
6HMA|1|A|U|964
6HMA|1|A|G|965
6HMA|1|A|C|966
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain K
- 50S ribosomal protein L16
- Chain U
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L30
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