IL_6HMA_032

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6HMA|1|A|C|1039

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_032 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.1273

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6HMA|1|A|C|1038
6HMA|1|A|C|1039
6HMA|1|A|A|1040
*
6HMA|1|A|U|1203
6HMA|1|A|G|1204

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21

Chain X

50S ribosomal protein L30