IL_6HMA_043

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6HMA|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_043 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1211

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6HMA|1|A|C|1246
6HMA|1|A|G|1247
6HMA|1|A|U|1248
6HMA|1|A|U|1249
6HMA|1|A|G|1250
6HMA|1|A|A|1251
6HMA|1|A|A|1252
6HMA|1|A|G|1253
*
6HMA|1|A|U|1272
6HMA|1|A|G|1273
6HMA|1|A|G|1274
6HMA|1|A|A|1275
6HMA|1|A|G|1276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20