IL_6HMA_048

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_048 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.1355

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6HMA|1|A|U|1394
6HMA|1|A|G|1395
6HMA|1|A|A|1396
6HMA|1|A|G|1397
6HMA|1|A|G|1398
*
6HMA|1|A|C|1407
6HMA|1|A|G|1408
6HMA|1|A|U|1409
6HMA|1|A|A|1410
6HMA|1|A|G|1411

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain V

50S ribosomal protein L28