IL_6HMA_050

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

6HMA|1|A|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_050 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.291

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6HMA|1|A|C|1461
6HMA|1|A|G|1462
6HMA|1|A|A|1463
6HMA|1|A|U|1464
6HMA|1|A|G|1465
*
6HMA|1|A|C|1624
6HMA|1|A|U|1625
6HMA|1|A|A|1626
6HMA|1|A|G|1627

Current chains

Chain A

23S ribosomal RNA

Nearby chains