IL_6HMA_077

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AUUC*GGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_077 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.2589

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HMA|1|A|A|2123
6HMA|1|A|U|2124
6HMA|1|A|U|2125
6HMA|1|A|C|2126
*
6HMA|1|A|G|2217
6HMA|1|A|G|2218
6HMA|1|A|C|2219
6HMA|1|A|U|2220

Current chains

Chain A

23S ribosomal RNA

Nearby chains