IL_6HMA_095

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_095 not in the Motif Atlas

Homologous match to IL_8VTW_100

Geometric discrepancy: 0.3122

The information below is about IL_8VTW_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74386.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6HMA|1|A|C|2618
6HMA|1|A|G|2619
*
6HMA|1|A|C|2628
6HMA|1|A|A|2629
6HMA|1|A|G|2630

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2