IL_6HMA_097

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMA_097 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.101

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6HMA|1|A|U|2679
6HMA|1|A|U|2680
6HMA|1|A|A|2681
6HMA|1|A|G|2682
6HMA|1|A|U|2683
6HMA|1|A|A|2684
6HMA|1|A|C|2685
*
6HMA|1|A|G|2690
6HMA|1|A|G|2691
6HMA|1|A|A|2692
6HMA|1|A|C|2693
6HMA|1|A|C|2694
6HMA|1|A|G|2695

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6