IL_6HMA_101
3D structure
- PDB id
- 6HMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GAUAAG*UGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 6HMA|1|A|A|2792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HMA_101 not in the Motif Atlas
- Homologous match to IL_7A0S_098
- Geometric discrepancy: 0.0901
- The information below is about IL_7A0S_098
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6HMA|1|A|G|2764
6HMA|1|A|A|2765
6HMA|1|A|U|2766
6HMA|1|A|A|2767
6HMA|1|A|A|2768
6HMA|1|A|G|2769
*
6HMA|1|A|U|2789
6HMA|1|A|G|2790
6HMA|1|A|A|2791
6HMA|1|A|A|2792
6HMA|1|A|G|2793
6HMA|1|A|C|2794
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain H
- 50S ribosomal protein L13
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