IL_6HMI_030

3D structure

PDB id

6HMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HMI_030 not in the Motif Atlas

Geometric match to IL_5TBW_085

Geometric discrepancy: 0.1538

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6HMI|15|A|C|8
6HMI|15|A|C|9
*
6HMI|15|B|G|13
6HMI|15|B|A|14
6HMI|15|B|G|15

Current chains

Chain A

RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3')

Chain B

RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')

Nearby chains